Graph Class Reference

Public Member Functions
vector< Node > &	getNodes ()
	get vector of nodes with matches in other sequences
unsigned int	getNumberOfSequences ()
	return the number of sequences for an ascending sorted nodes with respect to the rows
unsigned int	getNumberOfNodes (unsigned int sequence)
	get number of nodes for a sequence More...
vector< Edge > &	getEdges ()
	get vector of edges for all sequences
void	readFastaFiles (string nameFile, unsigned int k)
	read a fasta file More...
void	resetGraph ()
	reset the Graph clears nodes and edges and sets k to zero

Member Function Documentation

unsigned int Graph::getNumberOfNodes

(

unsigned int

sequence

)

get number of nodes for a sequence

Parameters

sequence

index for sequence

void Graph::readFastaFiles	(	string	nameFile,
		unsigned int	k
	)

read a fasta file

Parameters

nameFile	name of the fasta file
k	length of any node (kmer)

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The documentation for this class was generated from the following files:

• src/alignment/Graph.h
• src/alignment/Graph.cc